Table 1 Test datasets
From: IonCRAM: a reference-based compression tool for ion torrent sequence files
Bam Name | Source | Bam Size GB | No. Reads | Average Depth (reads) |
|---|---|---|---|---|
GP1.bam | In-house | 1.04 | 1,675,346 | 75 |
GP2.bam | In-house | 1.1 | 1,747,374 | 80 |
GP3.bam | In-house | 1.46 | 2,355,416 | 109 |
GP4.bam | In-house | 1.01 | 1,603,486 | 145 |
GP5.bam | In-house | 1.47 | 2,362,387 | 210 |
GP6.bam | In-house | 1.41 | 2,269,592 | 201 |
GP7.bam | In-house | 1.44 | 2,352,413 | 470 |
GP8.bam | In-house | 1.42 | 2,271,890 | 485 |
GP9.bam | In-house | 2.13 | 3,480,496 | 711 |
GP10.bam | In-house | 2.14 | 3,494,124 | 1053 |
GP11.bam | In-house | 2.83 | 4,637,535 | 1400 |
WES1 | In-house | 53.6 | 91,339,566 | 172 |
WES2 | In-house | 60.2 | 97,605,030 | 202 |
WES3 | In-house | 57.3 | 92,927,166 | 293 |
HG002_NA24385_SRR1767406 | NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ AshkenazimTrio/HG002_NA24385_son/ion_exome/HG002_NA24385_SRR1767406_IonXpress_020_rawlib_24028.bam) | 50.0 | 82,654,309 | 201 |
HG003_NA24149_SRR1767411 | NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ AshkenazimTrio/HG003_NA24149_father/ion_exome/HG003_NA24149_SRR1767411_IonXpress_022_rawlib_24022.bam) | 43.8 | 73,777,136 | 185 |
HG004_NA24143_SRR1767448 | NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ AshkenazimTrio/HG004_NA24143_mother/ion_exome/HG004_NA24143_SRR1767448_IonXpress_024_rawlib_24026.bam) | 50.6 | 83,487,089 | 214 |
NA12878 | NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ NA12878/ion_exome/IonXpress_020_rawlib.hg19.bam) | 25.1 | 41,792,386 | 131 |