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Table 1 Test datasets

From: IonCRAM: a reference-based compression tool for ion torrent sequence files

Bam Name Source Bam Size GB No. Reads Average Depth (reads)
GP1.bam In-house 1.04 1,675,346 75
GP2.bam In-house 1.1 1,747,374 80
GP3.bam In-house 1.46 2,355,416 109
GP4.bam In-house 1.01 1,603,486 145
GP5.bam In-house 1.47 2,362,387 210
GP6.bam In-house 1.41 2,269,592 201
GP7.bam In-house 1.44 2,352,413 470
GP8.bam In-house 1.42 2,271,890 485
GP9.bam In-house 2.13 3,480,496 711
GP10.bam In-house 2.14 3,494,124 1053
GP11.bam In-house 2.83 4,637,535 1400
WES1 In-house 53.6 91,339,566 172
WES2 In-house 60.2 97,605,030 202
WES3 In-house 57.3 92,927,166 293
HG002_NA24385_SRR1767406 NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ AshkenazimTrio/HG002_NA24385_son/ion_exome/HG002_NA24385_SRR1767406_IonXpress_020_rawlib_24028.bam) 50.0 82,654,309 201
HG003_NA24149_SRR1767411 NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ AshkenazimTrio/HG003_NA24149_father/ion_exome/HG003_NA24149_SRR1767411_IonXpress_022_rawlib_24022.bam) 43.8 73,777,136 185
HG004_NA24143_SRR1767448 NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ AshkenazimTrio/HG004_NA24143_mother/ion_exome/HG004_NA24143_SRR1767448_IonXpress_024_rawlib_24026.bam) 50.6 83,487,089 214
NA12878 NCBI (ftp://ftp-trace.ncbi.nlm.nih.gov/giab/ftp/data/ NA12878/ion_exome/IonXpress_020_rawlib.hg19.bam) 25.1 41,792,386 131