Table 4 Space saving of IonCRAM using different options
From: IonCRAM: a reference-based compression tool for ion torrent sequence files
File | Bam Size (GB) | CRAM Size (GB) | IonCRAM Size with xz (GB) | IonCRAM %Saving w.r.t. BAM (xz) | IonCRAM File Size (MB, gzip) | IonCRAM %Saving (gzip) | IonCRAM size (zstd) | IonCRAM %Saving (zstd) |
|---|---|---|---|---|---|---|---|---|
Gene Panels | ||||||||
Average values for Gene Panels | 1.55 | 1.02 | 0.89 | 42.60% | 0.92 | 40.56% | 0.90 | 42.10% |
Min | 1.02 | 0.67 | 0.59 | 42.46% | 0.61 | 40.13% | 0.59 | 41.83% |
Max | 2.76 | 1.82 | 1.59 | 42.90% | 1.63 | 41.13% | 1.59 | 42.40% |
In house Exomes | ||||||||
Average values for In-house Exomes | 57.07 | 36.85 | 32.17 | 43.64% | 33.80 | 40.77% | 32.84 | 42.46% |
Min | 53.64 | 34.34 | 30.31 | 43.37% | 31.84 | 40.53% | 30.86 | 42.18% |
Max | 60.25 | 38.87 | 34.12 | 44.06% | 35.83 | 41.14% | 34.83 | 42.72% |
Public Standard Exomes | ||||||||
Average values for public Exomes | 42.39 | 29.01 | 25.45 | 40.04% | 26.46 | 37.59% | 25.86 | 40.01% |
Min | 25.11 | 17.12 | 14.99 | 39.70% | 15.64 | 37.42% | 15.27 | 39.70% |
Max | 50.60 | 34.67 | 30.35 | 40.31% | 31.56 | 37.74% | 30.82 | 40.31% |