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Table 4 Space saving of IonCRAM using different options

From: IonCRAM: a reference-based compression tool for ion torrent sequence files

File Bam Size (GB) CRAM Size (GB) IonCRAM Size with xz (GB) IonCRAM %Saving w.r.t. BAM (xz) IonCRAM File Size (MB, gzip) IonCRAM %Saving (gzip) IonCRAM size (zstd) IonCRAM %Saving (zstd)
Gene Panels
Average values for Gene Panels 1.55 1.02 0.89 42.60% 0.92 40.56% 0.90 42.10%
Min 1.02 0.67 0.59 42.46% 0.61 40.13% 0.59 41.83%
Max 2.76 1.82 1.59 42.90% 1.63 41.13% 1.59 42.40%
In house Exomes
Average values for In-house Exomes 57.07 36.85 32.17 43.64% 33.80 40.77% 32.84 42.46%
Min 53.64 34.34 30.31 43.37% 31.84 40.53% 30.86 42.18%
Max 60.25 38.87 34.12 44.06% 35.83 41.14% 34.83 42.72%
Public Standard Exomes
Average values for public Exomes 42.39 29.01 25.45 40.04% 26.46 37.59% 25.86 40.01%
Min 25.11 17.12 14.99 39.70% 15.64 37.42% 15.27 39.70%
Max 50.60 34.67 30.35 40.31% 31.56 37.74% 30.82 40.31%