Table 6 CAMI medium-complexity dataset assembly result with MetaVelvet models trained with training dataset generated from Kraken-predicted species genomes
From: MetaVelvet-DL: a MetaVelvet deep learning extension for de novo metagenome assembly
| Â | MetaVelvet-DL | MetaVelvet-SL | Megahit |
|---|---|---|---|
N50 (> 500 bp) | 997 | 991 | 2682 |
# Contigs (> 500 bp) | 47,931 | 47,917 | 106,769 |
Total contig length | 77,284,835 | 77,094,128 | 242,383,239 |
Misassembled contig length ratio | 8.69e-3 | 1.10e-2 | 2.39e-3 |
Genome fraction (%) | 14.6 | 14.6 | 45.3 |
Total chimeric contig length | 9,796,796 (12.7%) | 9,606,278 (12.5%) | 13,140,546 (18.0%) |