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Table 1 Speed-up (ratio of execution times) gained by the CUDA implementation with respect to the previous Python version. Benchmark on platform 1

From: NormiRazor: tool applying GPU-accelerated computing for determination of internal references in microRNA transcription studies

Speed-up ± SD

total

kernel

 

Combination length

3

2

3

GN

18.7 ±0.6

19.3 ± 1.8

18.3 ± 0.6

BK

104.7 ±4.2

12887.5 ±1846.3

21993.4 ±1479.2

NF

76.5 ±2.2

66195.2 ±1035.1

11877.1 ± 433.5

NFG

84.0 ±3.3

6665.7 ±1105.0

13164.5 ± 595.6