Table 5 Estimates of \({\hat{\eta }}\) over different time periods for the David et al. data
(a) Subject A | ||||||
|---|---|---|---|---|---|---|
Phylum | Class | Family | Genus | All data | Days 123–364 | |
Actinobacteria | Actinobacteria | Actinomycetaceae | Actinomyces | 0.832 | 0.6665 | |
Actinobacteria | Actinobacteria | Bifidobacteriaceae | Bifidobacterium | 0.3566 | 0.5527 | |
Bacteroidetes | Bacteroidia | Bacteroidaceae | Bacteroides | 1.441 | 1.2507 | |
Bacteroidetes | Bacteroidia | Prevotellaceae | Prevotella | 2.0256 | 1.9338 | |
Firmicutes | Bacilli | Gemellaceae | Â | 1.1221 | 1.3865 | |
Firmicutes | Bacilli | Carnobacteriaceae | Granulicatella | 1.6666 | 1.8486 | |
Firmicutes | Bacilli | Streptococcaceae | Streptococcus | 1.3472 | 1.5587 | |
Firmicutes | Clostridia | Lachnospiraceae | Â | 0.136 | 0.5283 | |
Firmicutes | Clostridia | Lachnospiraceae | Â | 0.2726 | 0.8016 | |
Firmicutes | Clostridia | Lachnospiraceae | Â | 0.5886 | 1.0314 | |
Firmicutes | Clostridia | Lachnospiraceae | Blautia | 0.7966 | 0.785 | |
Firmicutes | Clostridia | Lachnospiraceae | Coprococcus | 0.7619 | 0.7905 | |
Firmicutes | Clostridia | Lachnospiraceae | Dorea | 0.8493 | 0.9004 | |
Firmicutes | Clostridia | Lachnospiraceae | Roseburia | 0.1311 | 0.1414 | |
Firmicutes | Clostridia | Lachnospiraceae | [Ruminococcus] | 0.5008 | 0.6914 | |
Firmicutes | Clostridia | Ruminococcaceae | Â | 0.1105 | 0.4005 | |
Firmicutes | Clostridia | Ruminococcaceae | Â | 0.6707 | 0.5662 | |
Firmicutes | Clostridia | Ruminococcaceae | Faecalibacterium | 0.8978 | 0.8938 | |
Firmicutes | Clostridia | Ruminococcaceae | Ruminococcus | 0.5539 | 0.7457 | |
Firmicutes | Clostridia | Veillonellaceae | Phascolarctobacterium | 0.734 | 0.8391 | |
Firmicutes | Clostridia | Veillonellaceae | Veillonella | 0.9389 | 0.9646 | |
Firmicutes | Erysipelotrichi | Erysipelotrichaceae | Â | 0.7742 | 0.8541 | |
Fusobacteria | Fusobacteria | Fusobacteriaceae | Fusobacterium | 2.0122 | 1.6443 | |
Proteobacteria | Gammaproteobacteria | Enterobacteriaceae | Â | 0.3079 | 0.3638 | |
Proteobacteria | Gammaproteobacteria | Pasteurellaceae | Haemophilus | 2.1665 | 2.6424 | |
(b) Subject B | ||||||
|---|---|---|---|---|---|---|
Phylum | Class | Family | Genus | All days | Days 0–150 | Days 160–318 |
Actinobacteria | Actinobacteria | Bifidobacteriaceae | Bifidobacterium | 0.9358 | 1.2257 | 1.2334 |
Bacteroidetes | Bacteroidia | Bacteroidaceae | Bacteroides | 0.6007 | 0.8103 | 0.3681 |
Firmicutes | Bacilli | Streptococcaceae | Streptococcus | 1.3091 | 2.78 | 0.785 |
Firmicutes | Clostridia | Lachnospiraceae | Â | 1.8332 | 0.6724 | 2.4082 |
Firmicutes | Clostridia | Lachnospiraceae | Â | 0.5128 | 0.9548 | 2.2174 |
Firmicutes | Clostridia | Lachnospiraceae | Â | 0.3539 | 0.733 | 0.3101 |
Firmicutes | Clostridia | Lachnospiraceae | [Ruminococcus] | 0.139 | 0.5218 | 1.4967 |
Firmicutes | Clostridia | Lachnospiraceae | Blautia | 1.0021 | 0.7035 | 0.3194 |
Firmicutes | Clostridia | Lachnospiraceae | Coprococcus | 0.6375 | 0.706 | 1.1748 |
Firmicutes | Clostridia | Lachnospiraceae | Dorea | 0.7622 | 0.7333 | 0.9792 |
Firmicutes | Clostridia | Lachnospiraceae | Roseburia | 3.9203 | 1.4014 | 5.3445 |
Firmicutes | Clostridia | Ruminococcaceae | Â | 0.7842 | 0.6013 | 5.3743 |
Firmicutes | Clostridia | Ruminococcaceae | Faecalibacterium | 0.7168 | 0.5899 | 1.0053 |
Firmicutes | Clostridia | Ruminococcaceae | Ruminococcus | 0.2663 | 0.6 | 0.2664 |
Firmicutes | Clostridia | Veillonellaceae | Phascolarctobacterium | 1.8373 | 1.2156 | 1.0925 |
Firmicutes | Clostridia | Veillonellaceae | Veillonella | 1.4537 | 1.4415 | 2.2837 |
Firmicutes | Erysipelotrichi | Erysipelotrichaceae | Â | 0.5073 | 0.5104 | 0.6201 |
Proteobacteria | Gammaproteobacteria | Enterobacteriaceae | Â | 4.9281 | 3.9415 | 5.3409 |
Proteobacteria | Gammaproteobacteria | Pasteurellaceae | Haemophilus | 1.2358 | 1.0513 | 2.0246 |