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Table 7 Comparison of estimated \(\eta\) values (with standard errors) for an OU process across body sites and individuals for common genera in the moving picture data (a) and for the gut within individuals from both studies (b)

From: Application of OU processes to modelling temporal dynamics of the human microbiome, and calculating optimal sampling schemes

(a) Moving picture
Genus Person Gut Tongue Left Right
Actinomyces 1   2.51 (1.11) 1.20 (0.28)  
2   1.42 (0.22) 1.06 (0.15) 1.91 (0.37)
Rothia 1   1.74 (0.50) 1.71 (0.49)  
2   1.18 (0.16) 1.68 (0.29) 3.00 (1.13)
Porphyromonas 1   0.59 (0.13) 0.98 (0.22)  
2 1.72 (0.32) 1.21 (0.17) 1.95 (0.38) 2.75 (0.88)
Prevotella 1   1.34 (0.33) 1.05 (0.24) 1.90 (0.60)
2 1.42 (0.23) 1.45 (0.22) 2.23 (0.51) 1.75 (0.32)
Gemella 1   2.05 (0.69) 1.38 (0.35)  
2   1.62 (0.27) 2.96 (1.07) 2.84 (0.96)
Granulicatella 1   1.36 (0.34) 1.27 (0.29)  
2   1.74 (0.30) 2.53 (0.69) 2.27 (0.54)
Streptococcus 1   0.98 (0.22) 1.39 (0.35) 2.25 (0.86)
2 1.24 (0.19) 2.29 (0.53) 2.41 (0.62) 2.28 (0.55)
Veillonella 1   1.28 (0.31) 1.16 (0.27)  
2   1.81 (0.33) 1.63 (0.28) 1.83 (0.34)
Fusobacterium 1   0.66 (0.14) 0.63 (0.14) 0.61 (0.13)
2   0.49 (0.07) 1.31 (0.19) 1.72 (0.31)
Neisseria 1   0.39 (0.09) 1.60 (0.44)  
2   1.48 (0.23) 1.49 (0.24) 1.83 (0.34)
Pasteurellaceae (unclassified) 1   1.21 (0.29) 2.30 (0.90) 2.14 (0.77)
2   1.28 (0.18) 2.16 (0.48) 3.67 (2.21)
Haemophilus 1   1.24 (0.30) 1.26 (0.30)  
2   1.64 (0.27) 1.68 (0.29) 1.98 (0.40)
(b) Gut microbiome across both data sets
  Person 1 Person 2 Subject A Subject B
Bacteroides 6.0000 (37.784) 2.5214 (0.743) 1.4410 (0.243) 0.6007 (0.113)
Blautia 2.7268 (1.427) 1.4392 (0.240) 0.7966 (0.113) 0.8709 (0.166)
Coprococcus 2.0080 (0.688) 1.0891 (0.161) 0.7619 (0.108) 0.6375 (0.119)
Faecalibacterium 1.2732 (0.315) 2.4203 (0.671) 0.8978 (0.129) 0.7168 (0.134)
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