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Table 1 Excerption table of results

From: ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom

Name

UniProt ID

Homologs

Putatively conserved

Cys position

Cys score (p value)

Cys-PTM

eEF1α

Q8GTY0

19

6 of 6

Cys1: 87

0.53 (9.09e−4)

S-NO, S-H2, oxidation

Cys2: 111

0.53 (9.09e−4)

Cys3: 150

0.58 (1.07e−4)

Cys4: 151

0.53 (9.09e−4)

Cys5: 152

0.53 (9.09e−4)

Cys6: 351

0.68 (1.00e−6)

eEF1β

Q9SCX3

13

1 of 1

Cys1: 216

0.77 (2.45e−3)

S-NO

eEF1γ

Q9FVT2

14

3 of 4

Cys1: 165

0.57 (7.71e−3)

S-NO, S–S

Cys2: 303

0.71 (1.03e−4)

Oxidation

Cys4: 411

0.50 (3.87e−2)

 

eEF1δ

P48006

13

1 of 2

Cys2: 223

0.77 (1.44e−3)

 

eEF1A

Q8L835

19

3 of 5

Cys1: 305

0.95 (1.32e−7)

S-NO

Cys3: 454

0.79 (2.84e−4)

 

Cys5: 495

0.89 (3.00e−6)

 

eEF1B

A8MRC4

13

1 of 4

Cys2: 223

0.77 (5.45e−3)

 

eEF2

Q9ASR1

19

14 of 16

Cys1: 131

0.95 (7.84e−16)

S-NO, S-SG

Cys2: 136

0.95 (7.84e−16)

S–S, oxidation

Cys3: 163

0.84 (4.16e−12)

 

Cys4: 267

0.84 (4.16e−12)

 

Cys5: 275

0.53 (1.11e−4)

 

Cys6: 286

0.63 (1.00e−6)

 

Cys7: 370

1.00 (3.27e−18)

 

Cys8: 448

0.84 (4.16e−12)

 

Cys9: 495

0.74 (3.90e−9)

 

Cys10: 520

0.89 (7.55e−14)

 

Cys11: 541

0.95 (7.84e−16)

 

Cys13: 651

0.74 (3.90e−9)

 

Cys15: 690

0.58 (1.20e−5)

 

Cys16: 797

0.89 (7.55e−14)

 

eRF1-1

Q39097

18

3 of 3

Cys1: 126

1.00 (1.13e−13)

Oxidation

Cys2: 388

0.89 (7.50e−10)

 

Cys3: 404

0.78 (3.75e−7)

 

2CP

Q96291

18

2 of 2

Cys1: 119

1.00 (3.92e−12)

S-NO, S-SG

Cys2: 241

0.89 (1.97e−8)

S–S, oxidation

SAL1

Q42546

18

3 of 4

Cys1:21

0.67 (0.00173)

S–S, oxidation

Cys3:167

1.00 (2.62e−10)

 

Cys4:190

0.611 (0.008)

 
  1. Excerption of the results table (Additional file 2: Table 1) generated via ConCysFind with the input query (Additional file 1: Table 2) and run with default parameters. Shown are UniProt ID, the number of homologs identified among the 21 selected species, position and scoring of conserved cysteines as well as identified Cys-PTM for every protein found in literature