From: LDkit: a parallel computing toolkit for linkage disequilibrium analysis
Population | Chromosome | Number of individuals | Number of SNPs | Peak memory (GB) | Running time (Minute) | ||
---|---|---|---|---|---|---|---|
PopLDdecay | LDkit | PopLDdecay | LDkit | ||||
CEU | Chr22 | 183 | 1,103,547 | 9.87 | 10.33 | 2.15 | 10.36 |
CHS | Chr22 | 171 | 1,103,547 | 9.1 | 10.12 | 2.03 | 11.11 |
ESN | Chr22 | 173 | 1,103,547 | 9.36 | 10.25 | 2.09 | 10.88 |
GWD | Chr22 | 180 | 1,103,547 | 9.74 | 10.45 | 2.11 | 10.01 |
IBS | Chr22 | 162 | 1,103,547 | 9.2 | 10.03 | 2.01 | 10.93 |
All | Chr22 | 2504 | 1,103,547 | 10.59 | 11 | 46.31 | 77.47 |