Table 2 Comparison of multiple-threads performance using PLINK and LDkit
From: LDkit: a parallel computing toolkit for linkage disequilibrium analysis
| Number of threads | Peak memory (GB) | Running time (Minute) | File sizes (GB) | |||
|---|---|---|---|---|---|---|
| PLINK 2.0 | LDkit | PLINK 2.0 | LDkit | PLINK 2.0 | LDkit | |
| 1 | 1.05 | 10.03 | 0.44 | 10.93 | 13.97 | 0.0019 |
| 4 | 1.05 | 10.63 | 0.43 | 3.14 | 13.97 | 0.0019 |
| 8 | 1.05 | 10.66 | 0.42 | 1.95 | 13.97 | 0.0019 |
| 16 | 1.05 | 11.01 | 0.42 | 1.08 | 13.97 | 0.0019 |
| 32 | 1.05 | 11.13 | 0.41 | 0.53 | 13.97 | 0.0019 |
| 64 | 1.05 | 11.25 | 0.43 | 0.63 | 13.97 | 0.0019 |
