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Table 2 Comparison of multiple-threads performance using PLINK and LDkit

From: LDkit: a parallel computing toolkit for linkage disequilibrium analysis

Number of threads Peak memory (GB) Running time (Minute) File sizes (GB)
PLINK 2.0 LDkit PLINK 2.0 LDkit PLINK 2.0 LDkit
1 1.05 10.03 0.44 10.93 13.97 0.0019
4 1.05 10.63 0.43 3.14 13.97 0.0019
8 1.05 10.66 0.42 1.95 13.97 0.0019
16 1.05 11.01 0.42 1.08 13.97 0.0019
32 1.05 11.13 0.41 0.53 13.97 0.0019
64 1.05 11.25 0.43 0.63 13.97 0.0019