Table 3 Comparison of LDkit and Haploview using MHC region
From: LDkit: a parallel computing toolkit for linkage disequilibrium analysis
| Population | Number of individuals | Number of SNPs | Peak memory (GB) | Running time (Minute) | ||
|---|---|---|---|---|---|---|
| LDkit | Haploview | LDkit | Haploview | |||
| All | 2504 | 97,900 | 10.13 | 1.00 | 9.20 | 200.00 |
| CEU | 183 | 97,900 | 10.66 | 1.00 | 4.90 | 110.00 |
| CHS | 171 | 97,900 | 10.99 | 1.00 | 4.70 | 105.00 |
| ESN | 173 | 97,900 | 11.22 | 1.00 | 5.10 | 101.00 |
| GWD | 180 | 97,900 | 11.19 | 1.00 | 4.90 | 103.00 |
| IBS | 162 | 97,900 | 11.28 | 1.00 | 4.80 | 100.00 |
