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Table 3 Comparison of LDkit and Haploview using MHC region

From: LDkit: a parallel computing toolkit for linkage disequilibrium analysis

Population Number of individuals Number of SNPs Peak memory (GB) Running time (Minute)
LDkit Haploview LDkit Haploview
All 2504 97,900 10.13 1.00 9.20 200.00
CEU 183 97,900 10.66 1.00 4.90 110.00
CHS 171 97,900 10.99 1.00 4.70 105.00
ESN 173 97,900 11.22 1.00 5.10 101.00
GWD 180 97,900 11.19 1.00 4.90 103.00
IBS 162 97,900 11.28 1.00 4.80 100.00