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Fig. 5 | BMC Bioinformatics

Fig. 5

From: PALMER: improving pathway annotation based on the biomedical literature mining with a constrained latent block model

Fig. 5

Identification of new pathway-modulating genes. Disjoint gene assignment between pathways. The heatmap shows the binary matrix, where a black cell indicates value of one. The color bars on the left show the true [left: “Gene (true)”] and the predicted gene clusters [right: “Gene (pred.)”], respectively. In the color bar “Gene (true)”, values 1 (red), 2 (green) and 3 (blue) indicate the mTOR signaling pathway genes, the JAK-STAT signaling pathway genes, and candidate genes. The color bar on the top indicates the predicted GO term clusters [“GO (pred.)”]

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BMC Bioinformatics

ISSN: 1471-2105

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