MADloy: robust detection of mosaic loss of chromosome Y from genotype-array-intensity data

BMC Bioinformatics

Table 2 Enrichment analysis of blood transcriptomic data in EGCUT samples

Count	Size	FDR	OR enrich	Term	Genes
3	32	0.0039	10.76	DNA replication	MCM4, RPA1, RPA3
2	22	0.0204	10.18	Mismatch repair	RPA1, RPA3
3	64	0.0264	5.08	Antigen processing and presentation	CD4, HSP90AA1, NFYC
2	26	0.0280	8.47	Homologous recombination	RPA1, RPA3
3	71	0.0345	4.55	Hematopoietic cell lineage	CD4, CSF2RA, ITGA2B
3	81	0.0480	3.95	Ribosome	RPS15, RPS24, RPSA
1	5	0.0497	24.94	Vitamin B6 metabolism	PSAT1

Table includes KEGG categories that are over-enriched using differentially expressed genes at false discovery rate (FDR) lower than 0.05. Only terms with size ≥ 5 are shown

ISSN: 1471-2105