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Table 11 The comparison of CPU time and virtual memory consumption of these three tools when RepAHR using the specific parameters of MAX_MEMORY=20, THREAD=20 to process these five datasets

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Species RepARK [CPU time (s)/virtual memory (kb)] REPdenovo [CPU time (s)/virtual memory (kb)] RepAHR [CPU time (s)/virtual memory (kb)]
Drosophila melanogaster 1387.63/9,546,368 4896.98/13,223,216 4387.63/9,558,308
Saccharomyces cerevisiae 770.96/4,887,024 12,846.08/48,140,200 2378.34/3,911,352
Acromyrmex echinatior 3198.22/18,730,776 18,747.07/25,592,284 19,489.55/18,750,436
Human chr14 1313.54/4,887,452 6397.10/5,878,436 4706.87/9,566,604
Musmusculus 9654.50/37,149,572 52,624.49/133,352,464 7879.77/36,734,056