Table 11 The comparison of CPU time and virtual memory consumption of these three tools when RepAHR using the specific parameters of MAX_MEMORY=20, THREAD=20 to process these five datasets
Species | RepARK [CPU time (s)/virtual memory (kb)] | REPdenovo [CPU time (s)/virtual memory (kb)] | RepAHR [CPU time (s)/virtual memory (kb)] |
|---|---|---|---|
Drosophila melanogaster | 1387.63/9,546,368 | 4896.98/13,223,216 | 4387.63/9,558,308 |
Saccharomyces cerevisiae | 770.96/4,887,024 | 12,846.08/48,140,200 | 2378.34/3,911,352 |
Acromyrmex echinatior | 3198.22/18,730,776 | 18,747.07/25,592,284 | 19,489.55/18,750,436 |
Human chr14 | 1313.54/4,887,452 | 6397.10/5,878,436 | 4706.87/9,566,604 |
Musmusculus | 9654.50/37,149,572 | 52,624.49/133,352,464 | 7879.77/36,734,056 |