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Table 2 Metrics of alignment segments

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Species Segment type Num N50 (bp) Avg length (bp) Max (bp) AR (%)
Drosophila melanogaster High-frequency k-mers 4105 1291 187.36 8256 58.90
High-frequency reads 1336 3336 542.81 8256 80.55
Mus musculus High-frequency k-mers 2612 1142 262.49 7673 24.73
High-frequency reads 421 5943 1203.55 7673 82.64
\(Homo \ sapiens\) chr14 High-frequency k-mers 1481 239 112.05 6064 38.32
High-frequency reads 242 394 338.63 6064 75.23
  1. \('Num'\) indicates the number of alignment segments. \('N50'\) indicates the length of the longest segment such that all the segments longer than this segment cover at least 50% of the total length of all segments. \('Avg\,Length (bp)'\) indicates the average length of segments. \('Max'\) indicates the maximum length of a repeat. \('AR (\%)'\) indicates alignment ratio of the high-frequency k-mers or the high-frequency reads on Repbase sequences