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Table 5 Statistics of running time and memory consumption of each tools on five datasets

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Species Method User time (s) System time (s) Percent of CPU this job got (%) Maximum resident set size (kbytes) File system outputs
Drosophila melanogaster RepARK CLC 1462.63 57.80 101 9,519,212 53,956,504
RepARK Velvet 1537.49 55.53 101 9,519,228 54,155,904
REPdenovo 4643.07 44.52 1211 13,194,748 42,044,664
RepAHR 4735.17 125.72 868 9,530,504 60,185,232
Saccharomyces cerevisiae RepARK CLC 792.39 25.27 101 4,875,512 29,969,488
RepARK Velvet 943.62 27.16 100 4,875,512 29,878,280
REPdenovo 11,229.97 5803.70 316 59,960,388 74,127,816
RepAHR 2507.21 102.31 856 4,876,644 34,047,800
Acromyrmex echinatior RepARK CLC 3437.92 154.23 96 18,693,376 86,491,600
RepARK Velvet 3929.52 194.82 100 18,693,376 86,459,800
REPdenovo 17,487.81 112.37 1272 25,530,952 77,131,304
RepAHR 20,763.21 288.73 1554 18,694,492 97,486,232
\(Homo \ sapiens\) chr14 RepARK CLC 1224.70 48.64 102 4,875,512 43,523,184
RepARK Velvet 1341.06 42.27 101 4,875,532 43,620,064
REPdenovo 5482.66 40.12 1280 5,853,720 37,027,688
RepAHR 4273.05 173.32 771 26,354,272 47,734,280
\(Mus\ musculus\) RepARK CLC 9245.10 709.18 101 36,635,684 329,177,184
RepARK Velvet 8977.43 421.34 100 36,635,676 333,214,224
REPdenovo 52,429.50 1047.07 1178 133,069,768 312,131,728
RepAHR 633,171.42 8987.20 2701 257,398,252 598,113,592
  1. \('User \, Time (s)'\) indicates the process spent in user mode. \('System \, Time (s)'\) indicates the process spent in system mode. \('Percent\,of\,CPU\,this\,job\,got'\) represents the percentage of the job using CPU. \('Maximum\, resident\, set\, size'\) represents the maximum resident memory size of the job. \('File\, system\, outputs'\) indicates the number of files output by this job