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Table 7 The ratios of segments in RepBase library covered by the repetitive sequences generated by each tools (The coverage ratios are calculated by BLAST)

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Metrics

Method

> 50%

> 70%

> 90%

BCR

RepARK CLC

87

57

33

RepARK Velvet

84

42

24

REPdenovo

19

15

7

RepAHR

173

116

69

MCR

RepARK CLC

155

115

64

RepARK Velvet

218

187

149

REPdenovo

22

19

13

RepAHR

241

206

161

  1. ’BCR’ indicates the best coverage ratio, ’MCR’ indicates the maximum coverage ratio
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BMC Bioinformatics

ISSN: 1471-2105

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