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Table 8 The comparison of CPU time and virtual memory consumption of these three tools when using default parameters to process these five datasets

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Species

RepARK [CPU time (s)/virtual memory (kb)]

REPdenovo [CPU time (s)/virtual memory (kb)]

RepAHR [CPU time (s)/virtual memory (kb)]

Drosophila melanogaster

1387.63/9,546,368

4,896.98/13,223,216

4441.25/11,333,456

Saccharomyces cerevisiae

770.96/4,887,024

12,846.08/48,140,200

2,429.36/4,921,672

Acromyrmex echinatior

3198.22/18,730,776

18,747.07/25,592,284

20,245.73/20,513,324

Human chr14

1313.54/4887,452

6,397.10/5,878,436

4,354.44/24,886,024

Musmusculus

9654.50/37,149,572

52,624.49/133,352,464

606,338.15/2,608,150,044