Skip to main content

Table 9 Statistics of the limit effect of the perameter of MAX_MEMORY on the memory usage of RepAHR when processing the Human-r14 dataset

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Species Method MAX_MEMORY CPU time (s) Virtual memory (kb)
\(Homo \ sapiens\) chr14   Default 4354.44 24,886,024
RepAHR 19 5321.77 4,910,644
  20 5207.86 8,160,520
  1. The parameter MAX_MEMORY is used to set the maximum memory usage of the algorithm