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Table 9 Statistics of the limit effect of the perameter of MAX_MEMORY on the memory usage of RepAHR when processing the Human-r14 dataset

From: RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads

Species

Method

MAX_MEMORY

CPU time (s)

Virtual memory (kb)

\(Homo \ sapiens\) chr14

 

Default

4354.44

24,886,024

RepAHR

19

5321.77

4,910,644

 

20

5207.86

8,160,520

  1. The parameter MAX_MEMORY is used to set the maximum memory usage of the algorithm
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BMC Bioinformatics

ISSN: 1471-2105

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