From: Impact of concurrency on the performance of a whole exome sequencing pipeline
Task | 4 processors | 8 processors | 16 processors |
---|---|---|---|
Mean ± Std (s) | Mean ± Std (s) | Mean ± Std (s) | |
(a) 2-samples execution | |||
Align to nuclear | 1.75 ± 0.01 | 2.84 ± 0.02 | 3.19 ± 0.04 |
Align to exome | 1.76 ± 0.01 | 1.79 ± 0.01 | 2.87 ± 0.07 |
Identify INDELs nuclear | 1.95 ± 0.01 | 1.83 ± 0.01 | 2.15 ± 0.09 |
Compute BQSR nuclear | 2.38 ± 0.03 | 2.69 ± 0.02 | 2.91 ± 0.15 |
Post BQSR nuclear | 3.09 ± 0.01 | 3.17 ± 0.03 | 3.1 ± 0.04 |
Task | 6 processors | 12 processors | 24 processors |
---|---|---|---|
Mean ± Std (s) | Mean ± Std (s) | Mean ± Std (s) | |
(b) 3-samples execution. | |||
Align to nuclear | 2.05 ± 0.01 | 3.72 ± 0.01 | 3.91 ± 0.05 |
Align to exome | 1.61 ± 0.01 | 2.06 ± 0.01 | 3.62 ± 0.05 |
Identify INDELs nuclear | 1.88 ± 0.03 | 2.2 ± 0.06 | 2.75 ± 0.16 |
Compute BQSR nuclear | 2.96 ± 0.02 | 3.26 ± 0.03 | 3.96 ± 0.14 |
Post BQSR nuclear | 4.32 ± 0.03 | 4.37 ± 0.12 | 4.43 ± 0.04 |