Fig. 1
From: GeneSetCluster: a tool for summarizing and integrating gene-set analysis results
Pipeline of the package. Overview of the standard GeneSetCluster pipeline. A PathwayObject is created using LoadGeneSets or ObjectCreator. This is followed by harmonizing and distance calculation (CombineGeneSets), deteremine the optimal number of clusters (OptimalGeneSets) and clustering (ClusterGeneSets). Data is then visualized (PlotGeneSets), exported (WriteGeneSets) or used for functional interpretations (ORAperGeneSets/GetSTRINGdbPerGeneSets)