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Table 1 The clustering effect of Clover on Leptospira shermani assemblies

From: Clover: a clustering-oriented de novo assembler for Illumina sequences

p Nodes Contigs Scaffolds Time (min) Memory (GB)
Num Total (kb) Max (kb) N50 (kb) Num Total (kb) Max (kb) N50 (kb)
0 33,692,986 5070 3818 9 1.0 182 3947 178 54 45.8 17.7
1 15,969,082 1201 3875 34 5.5 117 3897 196 85 30.5 16.2
2 11,917,810 1103 3859 27 6.1 117 3880 145 63 36.0 11.7
  1. p the level of error allowance on the k-mers, Nodes the number of nodes to build de Bruijn graph, Num the number of sequences produced, Total the total length of sequences produced, Max the maximum length of sequences produced, N50 the N50 statistic calculated with respect to the total length of sequences produced, Time the run time to assemble the genome, Memory the memory requirement to assemble the genome