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Table 1 The clustering effect of Clover on Leptospira shermani assemblies

From: Clover: a clustering-oriented de novo assembler for Illumina sequences

p

Nodes

Contigs

Scaffolds

Time (min)

Memory (GB)

Num

Total (kb)

Max (kb)

N50 (kb)

Num

Total (kb)

Max (kb)

N50 (kb)

0

33,692,986

5070

3818

9

1.0

182

3947

178

54

45.8

17.7

1

15,969,082

1201

3875

34

5.5

117

3897

196

85

30.5

16.2

2

11,917,810

1103

3859

27

6.1

117

3880

145

63

36.0

11.7

  1. p the level of error allowance on the k-mers, Nodes the number of nodes to build de Bruijn graph, Num the number of sequences produced, Total the total length of sequences produced, Max the maximum length of sequences produced, N50 the N50 statistic calculated with respect to the total length of sequences produced, Time the run time to assemble the genome, Memory the memory requirement to assemble the genome