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Fig. 4 | BMC Bioinformatics

Fig. 4

From: Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models

Fig. 4

Heatmap of the Fleiss kappa statistic for different models and cancer types. “PLv” represents “Pathway-level” and “GLv” represents “Gene-level”. HALLMARK, PID, BIOCARTA, REACTOME and BP are the used five pathway collections as introduced in "Methods" section. Corresponding to each model introduced in "Methods" section: “log OR” and “Binary” represent the two enrichment methods for SPM data; “all genes”, “Path intersected”, “Cosmic intersected”, “Cox filter” represents the filters on the genes. The maximum value among all is 0.57 and the minimum is − 0.01

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