Skip to main content

Table 1 Predicotors of LGG SPM gene-level (all genes) model and fitting results of Cox models

From: Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models

 

Multivariable Cox model

Univariable Cox model

Hazard ratios

se(coef)

p value

Hazard ratios

se(coef)

p value

PDGFRA

29.73

0.49

5.47E−12

24.49

0.48

2.66E−11

IDH1

0.28

0.22

5.68E−09

0.25

0.18

5.93E−14

EGFR

4.17

0.29

6.15E−07

5.05

0.25

1.23E−10

KALRN

0.22

1.04

1.46E−01

0.15

1.02

6.76E−02

TNR

0.00

2402.16

9.90E−01

2.91E−08

2560.82

9.95E−01

GALNT12

0.00

1249.74

9.90E−01

0.20

1.03

1.23E−01

SERINC3

0.00

2402.16

9.90E−01

2.91E−08

2560.82

9.95E−01

TMX4

0.00

2235.75

9.94E−01

9.57E−08

1683.51

9.92E−01

CDK19

0.00

7374.16

9.98E−01

3.29E−08

2381.56

9.94E−01

TMEM82

1.61

7732.63

1.00E+00

3.21E−08

2611.31

9.95E−01

TWISTNB

1

0

NA

2.91E−08

2560.82

9.95E−01

UTP6

1

0

NA

0.20

1.03

1.23E−01

ACTL8

1

0

NA

2.91E−08

2560.82

9.95E−01

TLR3

1

0

NA

2.91E−08

2560.82

9.95E−01

PPP1R16B

1

0

NA

3.21E−08

2611.31

9.95E−01

FLAD1

1

0

NA

2.91E−08

2560.82

9.95E−01