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Table 3 Predictors of LGG CNV gene-level (all genes) model and fitting results of Cox models

From: Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models

  Multivariable Cox model Univariable Cox model
Hazard ratios se(coef) p value Hazard ratios se(coef) p value
METTL1 (12q14.1) 1.37 0.10 1.55E−03 1.75 0.08 1.49E−12
JPH4 (14q11.2) 0.36 0.37 5.84E−03 0.11 0.39 1.45E−08
SLC16A9 (10q21.2) 0.29 0.58 3.18E−02 0.04 0.27 1.01E−30
NRG3 (10q23.1) 0.07 1.95 1.62E−01 0.05 0.26 4.47E−31
MTAP (9p21.3) 0.30 1.03 2.35E−01 0.13 0.21 1.82E−22
CCSER2 (10q23.1) 12.94 2.68 3.39E−01 0.04 0.27 3.83E−31
ZC3H7B (22q13.2) 0.66 0.76 5.87E−01 0.17 0.30 3.56E−09
LINC00864 (10q23.2) 0.58 1.64 7.40E−01 0.05 0.27 2.40E−29
TNRC6B (22q13.1) 0.74 1.30 8.18E−01 0.11 0.31 3.04E−12
C9orf53 (9p21.3) 0.83 1.02 8.51E−01 0.13 0.21 1.53E−22
APOBEC3F (22q13.1) 1.19 1.10 8.71E−01 0.10 0.32 5.10E−13
KLLN (10q23) 0.96 0.96 9.64E−01 0.06 0.25 1.95E−29
LINC00948 (10q21.2) NA 0 NA 0.04 0.27 1.01E−30
CCDC6 (10q21.2) NA 0 NA 0.04 0.27 1.01E−30
C10orf40 (10q21.2) NA 0 NA 0.04 0.27 1.01E−30
APOBEC3G (22q13.1) NA 0 NA 0.10 0.32 5.10E−13