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Table 3 Predictors of LGG CNV gene-level (all genes) model and fitting results of Cox models

From: Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models

 

Multivariable Cox model

Univariable Cox model

Hazard ratios

se(coef)

p value

Hazard ratios

se(coef)

p value

METTL1 (12q14.1)

1.37

0.10

1.55E−03

1.75

0.08

1.49E−12

JPH4 (14q11.2)

0.36

0.37

5.84E−03

0.11

0.39

1.45E−08

SLC16A9 (10q21.2)

0.29

0.58

3.18E−02

0.04

0.27

1.01E−30

NRG3 (10q23.1)

0.07

1.95

1.62E−01

0.05

0.26

4.47E−31

MTAP (9p21.3)

0.30

1.03

2.35E−01

0.13

0.21

1.82E−22

CCSER2 (10q23.1)

12.94

2.68

3.39E−01

0.04

0.27

3.83E−31

ZC3H7B (22q13.2)

0.66

0.76

5.87E−01

0.17

0.30

3.56E−09

LINC00864 (10q23.2)

0.58

1.64

7.40E−01

0.05

0.27

2.40E−29

TNRC6B (22q13.1)

0.74

1.30

8.18E−01

0.11

0.31

3.04E−12

C9orf53 (9p21.3)

0.83

1.02

8.51E−01

0.13

0.21

1.53E−22

APOBEC3F (22q13.1)

1.19

1.10

8.71E−01

0.10

0.32

5.10E−13

KLLN (10q23)

0.96

0.96

9.64E−01

0.06

0.25

1.95E−29

LINC00948 (10q21.2)

NA

0

NA

0.04

0.27

1.01E−30

CCDC6 (10q21.2)

NA

0

NA

0.04

0.27

1.01E−30

C10orf40 (10q21.2)

NA

0

NA

0.04

0.27

1.01E−30

APOBEC3G (22q13.1)

NA

0

NA

0.10

0.32

5.10E−13