Table 2 GEO experiments, GEO samples, and SRA identifiers used to obtain RNA-seq data
Organism | GEO series | GEO samples | SRA | Condition | Tissue | Date |
|---|---|---|---|---|---|---|
Arabidopsis thaliana | GSE85653 | GSM2280286 | SRR4033018 | Heat stress rep1 | Leaves | May-30-2018 |
Arabidopsis thaliana | GSE85653 | GSM2280287 | SRR4033019 | Heat stress rep2 | Leaves | May-30-2018 |
Arabidopsis thaliana | GSE85653 | GSM2280288 | SRR4033020 | Heat stress rep3 | Leaves | May-30-2018 |
Arabidopsis thaliana | GSE93979 | GSM2466002 | SRR5196729 | WT drought rep1 | Leaf | Jun-13-2017 |
Arabidopsis thaliana | GSE93979 | GSM2466003 | SRR5196730 | WT drought rep1 | Leaf | Jun-13-2017 |
Arabidopsis thaliana | GSE93420 | GSM2453038 | SRR5167847 | WT_dehydration1 | Leaf | Apr-11-2017 |
Arabidopsis thaliana | GSE93420 | GSM2453039 | SRR5167848 | WT_dehydration2 | Leaf | Apr-11-2017 |
Arabidopsis thaliana | GSE93420 | GSM2453040 | SRR5167849 | WT_dehydration3 | Leaf | Apr-11-2017 |
Arabidopsis thaliana | GSE94015 | GSM2467113 | SRR5197907 | WT RL3h rep1 heat stress (treated at 37 °C for 3 h) | Rosette leaves at flower stages 1–9 | Mar-15-2017 |
Arabidopsis thaliana | GSE94015 | GSM2467114 | SRR5197908 | WT RL3h rep2 heat stress (treated at 37 °C for 3 h) | Rosette leaves at flower stages 1–9 | Mar-15-2017 |
Arabidopsis thaliana | GSE94015 | GSM2467115 | SRR5197909 | WT RL3h rep3 heat stress (treated at 37 °C for 3 h) | Rosette leaves at flower stages 1-9 | Mar-15-2017 |
Arabidopsis thaliana | GSE72806 | GSM1872392 | SRR2302914 | Col h-1R heat stress (44 °C for 1 h) | Leaves | Oct-24-2016 |
Arabidopsis thaliana | GSE72806 | GSM1872393 | SRR2302915 | Col h-2R heat stress (44 °C for 1 h) | Leaves | Oct-24-2016 |
Arabidopsis thaliana | GSE72806 | GSM1872394 | SRR2302916 | Col h-3R heat stress (44 °C for 1 h) | Leaves | Oct-24-2016 |
Arabidopsis thaliana | GSE72806 | GSM1872389 | SRR2302911 | Col s-1R salinity stress | Leaves | Oct-24-2016 |
Arabidopsis thaliana | GSE72806 | GSM1872390 | SRR2302912 | Col s-2R salinity stress | Leaves | Oct-24-2016 |
Arabidopsis thaliana | GSE72806 | GSM1872391 | SRR2302913 | Col s-3R salinity stress | Leaves | Oct-24-2016 |
Oryza sativa | GSE101734 | GSM2714235 | SRR5856930 | Salt | Seedling leaf | Jul-22-2017 |
Oryza sativa | GSE101734 | GSM2714236 | SRR5856931 | Salt | Seedling leaf | Jul-22-2017 |
Oryza sativa | GSE101734 | GSM2714237 | SRR5856932 | Salt | Seedling leaf | Jul-22-2017 |
Oryza sativa | GSE77510 | GSM2053502 | SRR3140959 | Heat stress (45 °C)—12 h | Leaf | Dec-21-2017 |
Oryza sativa | GSE78972 | GSM2082859 | SRR3209771 | Long Day Drought_S3 | Leaf | Mar-01-2017 |
Oryza sativa | GSE78972 | GSM2082860 | SRR3209772 | Long Day Drought_S4 | Leaf | Mar-01-2017 |
Oryza sativa | GSE78972 | GSM2082863 | SRR3209775 | Short Day Drought_S7 | Leaf | Mar-01-2017 |
Oryza sativa | GSE78972 | GSM2082864 | SRR3209776 | Short Day Drought_S8 | Leaf | Mar-01-2017 |
Oryza sativa | GSE78972 | GSM2082866 | SRR3209778 | Long Day Drought_S10 | Leaf | Mar-01-2017 |
Oryza sativa | GSE78972 | GSM2082868 | SRR3209780 | Short Day Drought_S12 | Leaf | Mar-01-2017 |
Oryza sativa | GSE80811 | GSM2137964 | SRR3466960 | Drought—1 d | Leaves | Feb-14-2017 |
Oryza sativa | GSE80811 | GSM2137964 | SRR3466961 | Drought—1 d | Leaves | Feb-14-2017 |
Oryza sativa | GSE80811 | GSM2137965 | SRR3466962 | Drought—2 d | Leaves | Feb-14-2017 |
Oryza sativa | GSE80811 | GSM2137965 | SRR3466963 | Drought—2 d | Leaves | Feb-14-2017 |
Oryza sativa | GSE80811 | GSM2137966 | SRR3466964 | Drought—3 d | Leaves | Feb-14-2017 |
Oryza sativa | GSE80811 | GSM2137966 | SRR3466965 | Drought—3 d | Leaves | Feb-14-2017 |
Oryza sativa | GSE95668 | GSM2520922 | SRR5311340 | Heat—35 °C—6 h | Leaf | Nov-07-2017 |
Oryza sativa | GSE95668 | GSM2520923 | SRR5311341 | Heat—35 °C—6 h | Leaf | Nov-07-2017 |
Zea mays | GSE71723 | GSM1843772 | SRR2144414 | Drought | Leaf V12 | Feb-04-2016 |
Zea mays | GSE71723 | GSM1843780 | SRR2144422 | Drought | Leaf V14 | Feb-04-2016 |
Zea mays | GSE71723 | GSM1843788 | SRR2144430 | Drought | Leaf V16 | Feb-04-2016 |
Zea mays | GSE71723 | GSM1843796 | SRR2144438 | Drought | Leaf R1 | Feb-04-2016 |
Zea mays | GSE71377 | GSM1833214 | SRR2129983 | Drought | Leaf | Jan-22-2016 |
Zea mays | GSE71046 | GSM1826061 | SRR2106186 | wt Salt T7 Rep1 | Youngest wrapped leaf | Jan-14-2016 |
Zea mays | GSE71046 | GSM1826073 | SRR2106198 | wt Salt T0 Rep2 + Rep3 | Youngest wrapped leaf | Jan-14-2016 |
Zea mays | GSE71046 | GSM1826077 | SRR2106202 | wt Salt T7 Rep2 + Rep3 | Youngest wrapped leaf | Jan-14-2016 |
Glycine max | GSE98958 | GSM2628302 | SRR5569810 | Dehydrated | Leaf | May-31-2018 |
Glycine max | GSE98958 | GSM2628302 | SRR5569811 | Dehydrated | Leaf | May-31-2018 |
Glycine max | GSE98958 | GSM2628303 | SRR5569812 | Dehydrated | Leaf | May-31-2018 |
Glycine max | GSE98958 | GSM2628303 | SRR5569813 | Dehydrated | Leaf | May-31-2018 |
Glycine max | GSE69571 | GSM1704043 | SRR2051086 | Salt stress | Leaves | Jul-11-2017 |
Glycine max | GSE69571 | GSM1704044 | SRR2051087 | Salt stress | Leaves | Jul-11-2017 |
Glycine max | GSE69571 | GSM1704045 | SRR2051088 | Salt stress | Leaves | Jul-11-2017 |
Glycine max | GSE69571 | GSM1704046 | SRR2051089 | Salt stress | Leaves | Jul-11-2017 |
Glycine max | GSE70310 | GSM1723542 | SRR2079645 | Drought (15 days) | Leaf r2 stage | Aug-31-2015 |
Glycine max | GSE70310 | GSM1723542 | SRR2079646 | Drought (15 days) | Leaf r2 stage | Aug-31-2015 |
Glycine max | GSE70310 | GSM1723542 | SRR2079647 | Drought (15 days) | Leaf r2 stage | Aug-31-2015 |
Glycine max | GSE69469 | GSM1701586 | SRR2048167 | Drought (3 days ZT0-8 h R1) | Leaves v1 stage | Jul-07-2015 |
Glycine max | GSE69469 | GSM1701592 | SRR2048173 | Drought (3 days ZT4-12 h R1) | Leaves v1 stage | Jul-07-2015 |
Glycine max | GSE69469 | GSM1701598 | SRR2048179 | Drought (3 days ZT8-16 h R1) | Leaves v1 stage | Jul-07-2015 |
Glycine max | GSE69469 | GSM1701604 | SRR2048185 | Drought (3 days ZT12-20 h R1) | Leaves v1 stage | Jul-07-2015 |
Glycine max | GSE69469 | GSM1701610 | SRR2048191 | Drought (3 days ZT16-24 h R1) | Leaves v1 stage | Jul-07-2015 |
Glycine max | GSE69469 | GSM1701616 | SRR2048197 | Drought (3 days ZT20-4 h R1) | Leaves v1 stage | Jul-07-2015 |