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Table 1 The time consumption of searching correlated genes using different methods

From: smORFunction: a tool for predicting functions of small open reading frames and microproteins

Time (s) Brute force
No pre-ranked
Brute force
Pre-ranked
BallTree
Pre-ranked
Pre-rank 0.344 (± 0.00299) 0.348 (± 0.00805)
Build model 21.7 (± 0.166)
Search 17.9 (± 0.157) 1.713 (± 0.0445) 1.08 (± 0.471)
  1. The algorithms were run on Intel(R) Core(TM) i7-7700HQ CPU with 24 GB RAM
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