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Table 1 The time consumption of searching correlated genes using different methods

From: smORFunction: a tool for predicting functions of small open reading frames and microproteins

Time (s)

Brute force

No pre-ranked

Brute force

Pre-ranked

BallTree

Pre-ranked

Pre-rank

–

0.344 (± 0.00299)

0.348 (± 0.00805)

Build model

–

–

21.7 (± 0.166)

Search

17.9 (± 0.157)

1.713 (± 0.0445)

1.08 (± 0.471)

  1. The algorithms were run on Intel(R) Core(TM) i7-7700HQ CPU with 24 GB RAM