|
Sample ID
|
Max quant
|
MS-GF+
|
Percolator
|
PLATO
|
|---|
|
2014-03-04-mel3p1
|
2533
|
2967
|
3748
|
3898
|
|
2014-03-04-mel3p2
|
2770
|
3341
|
4467
|
4412
|
|
2014-03-06-mel3p1
|
2441
|
2704
|
3632
|
3681
|
|
2014-03-06-mel3p2
|
2594
|
3140
|
4271
|
4157
|
|
2014-03-04-mel4p1
|
2634
|
3108
|
3929
|
4073
|
|
2014-03-04-mel4p2
|
1765
|
3073
|
4004
|
3757
|
|
2014-03-06-mel4p1
|
2401
|
2824
|
3526
|
3682
|
|
2014-03-06-mel4p2
|
1745
|
2694
|
3856
|
3954
|
|
2014-03-05-mel5p1
|
3010
|
2517
|
3742
|
3923
|
|
2014-03-05-mel5p2
|
3342
|
2561
|
4023
|
4127
|
|
2014-03-06-mel5p1
|
2934
|
2643
|
3929
|
4059
|
|
2014-03-06-mel5p2
|
3060
|
2592
|
4070
|
4014
|
|
2014-03-05-mel8p1
|
3375
|
3057
|
4006
|
4297
|
|
2014-03-05-mel8p2
|
3764
|
2976
|
4511
|
4556
|
|
2014-03-06-mel8p1
|
3331
|
3023
|
4375
|
4454
|
|
2014-03-06-mel8p2
|
4139
|
3444
|
4801
|
4839
|
|
2014-03-04-mel12p1
|
1948
|
1601
|
2724
|
2870
|
|
2014-03-04-mel12p2
|
2013
|
1408
|
2855
|
3121
|
|
2014-03-06-mel12p1
|
2004
|
1301
|
3028
|
3005
|
|
2014-03-06-mel12p2
|
2628
|
1601
|
2942
|
3356
|
- MHC-bound peptides were eluted from melanoma samples collected from five different patients (identified as mel3, mel4, mel5, mel8, and mel12), with two biological replicates (p1/p2) per patient, each analyzed on two independent MS/MS runs (identified by the date in the sample ID). For each MS/MS dataset, the largest number of identified peptides is typeset in italics
