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Table 1 AUC-ROC values for missing PPI prediction

From: Graph embeddings on gene ontology annotations for protein–protein interaction prediction

GO Model Human Mouse Yeast
BP Resnik 0.8257 0.8154 0.8224
Lin 0.8065 0.7831 0.7752
Jang and Conrath 0.7973 0.7694 0.7610
simGIC 0.8147 0.7775 0.7914
Onto2Vec 0.8458 0.8316 0.8416
GOA2Vec (cos) 0.8513 0.8419 0.8674
GOA2Vec (mhd) 0.8676 0.8527 0.8718
GOA2Vec (svm) 0.8814 0.8728 0.8889
CC Resnik 0.7776 0.7826 0.7916
Lin 0.7165 0.7251 0.7435
Jang and Conrath 0.7134 0.7295 0.7201
simGIC 0.7658 0.7761 0.7715
Onto2Vec 0.7984 0.8016 0.8068
GOA2Vec (cos) 0.8027 0.8196 0.8035
GOA2Vec (mhd) 0.8237 0.8349 0.8146
GOA2Vec (svm) 0.8396 0.8517 0.8358
MF Resnik 0.7934 0.7815 0.7916
Lin 0.7335 0.7428 0.7432
Jang and Conrath 0.7129 0.7349 0.7216
simGIC 0.7618 0.7796 0.7794
Onto2Vec 0.7953 0.7954 0.8059
GOA2Vec (cos) 0.8115 0.8145 0.8243
GOA2Vec (mhd) 0.8223 0.8316 0.8253
GOA2Vec (svm) 0.8397 0.8608 0.8411
  1. GO refers to ontology type used