Graph embeddings on gene ontology annotations for protein–protein interaction prediction

BMC Bioinformatics

Table 1 AUC-ROC values for missing PPI prediction

GO	Model	Human	Mouse	Yeast
BP	Resnik	0.8257	0.8154	0.8224
	Lin	0.8065	0.7831	0.7752
	Jang and Conrath	0.7973	0.7694	0.7610
	simGIC	0.8147	0.7775	0.7914
	Onto2Vec	0.8458	0.8316	0.8416
	GOA2Vec (cos)	0.8513	0.8419	0.8674
	GOA2Vec (mhd)	0.8676	0.8527	0.8718
	GOA2Vec (svm)	0.8814	0.8728	0.8889
CC	Resnik	0.7776	0.7826	0.7916
	Lin	0.7165	0.7251	0.7435
	Jang and Conrath	0.7134	0.7295	0.7201
	simGIC	0.7658	0.7761	0.7715
	Onto2Vec	0.7984	0.8016	0.8068
	GOA2Vec (cos)	0.8027	0.8196	0.8035
	GOA2Vec (mhd)	0.8237	0.8349	0.8146
	GOA2Vec (svm)	0.8396	0.8517	0.8358
MF	Resnik	0.7934	0.7815	0.7916
	Lin	0.7335	0.7428	0.7432
	Jang and Conrath	0.7129	0.7349	0.7216
	simGIC	0.7618	0.7796	0.7794
	Onto2Vec	0.7953	0.7954	0.8059
	GOA2Vec (cos)	0.8115	0.8145	0.8243
	GOA2Vec (mhd)	0.8223	0.8316	0.8253
	GOA2Vec (svm)	0.8397	0.8608	0.8411

ISSN: 1471-2105