Graph embeddings on gene ontology annotations for protein–protein interaction prediction

BMC Bioinformatics

Table 2 AUC-ROC values for spurious PPI prediction

Onto	Model	Human	Mouse	Yeast
BP	Resnik	0.8243	0.7935	0.7917
	Lin	0.7758	0.7514	0.7572
	Jang and Conrath	0.7494	0.7427	0.7348
	simGIC	0.7965	0.7638	0.7823
	Onto2Vec	0.8426	0.8167	0.8051
	GOA2Vec (cos)	0.8613	0.8207	0.8324
	GOA2Vec (mhd)	0.8725	0.8439	0.8467
	GOA2Vec (svm)	0.8809	0.8613	0.8654
CC	Resnik	0.7827	0.7758	0.8016
	Lin	0.7334	0.7364	0.7452
	Jang and Conrath	0.7157	0.7296	0.7291
	simGIC	0.7608	0.7710	0.7776
	Onto2Vec	0.8016	0.7913	0.7935
	GOA2Vec (cos)	0.8191	0.8142	0.8117
	GOA2Vec (mhd)	0.8360	0.8207	0.8254
	GOA2Vec (svm)	0.8415	0.8427	0.8394
MF	Resnik	0.7903	0.7817	0.7834
	Lin	0.7317	0.7298	0.7265
	Jang and Conrath	0.7186	0.7215	0.7184
	simGIC	0.7636	0.7716	0.7716
	Onto2Vec	0.8137	0.7903	0.8216
	GOA2Vec (cos)	0.8116	0.8134	0.8177
	GOA2Vec (mhd)	0.8209	0.8275	0.8194
	GOA2Vec (svm)	0.8367	0.8416	0.8385

ISSN: 1471-2105