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Table 4 AUC-ROC values between different methods between using undirected graphs and using directed graphs for spurious PPI prediction

From: Graph embeddings on gene ontology annotations for protein–protein interaction prediction

GO Model Human Mouse Yeast
BP svm 0.8809 0.8613 0.8654
mhd 0.8725 0.8439 0.8467
cos 0.8613 0.8207 0.8324
d_svm 0.8369 0.8194 0.8207
d_mhd 0.8203 0.8034 0.8101
d_cos 0.8167 0.7908 0.7964
CC svm 0.8415 0.8427 0.8394
mhd 0.8360 0.8207 0.8254
cos 0.8191 0.8142 0.8117
d_svm 0.8127 0.7961 0.7985
d_mhd 0.8002 0.7834 0.7749
d_cos 0.7763 0.7771 0.7746
MF svm 0.8367 0.8416 0.8385
mhd 0.8209 0.8275 0.8194
cos 0.8116 0.8134 0.8177
d_svm 0.7912 0.8027 0.7823
d_mhd 0.7768 0.7824 0.7658
d_cos 0.7834 0.7739 0.7549
  1. “d” stands for directed graph