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Table 6 Statistics of the ground-truth PPI datasets as well as removed PPIs (“Re-PPI”) and added PPIs (“Ad-PPI”)

From: Graph embeddings on gene ontology annotations for protein–protein interaction prediction

Dataset #Protein #PPI #Re-PPI #Ad-PPI
HUMAN 6966 1,784,108 500,000 500,000
MOUSE 16,105 7,515,864 500,000 500,000
YEAST 2851 456,936 100,000 100,000