Table 2 The results of feature selection for H. sapiens
From: m5CPred-SVM: a novel method for predicting m5C sites of RNA
Feature subset | KS | BC | Sn (%) | Sp (%) | Pre (%) | Acc (%) | Mcc | F1score | AUC |
|---|---|---|---|---|---|---|---|---|---|
PSNP | 1 | 32 | 81.5 | 81.0 | 81.1 | 81.3 | 0.625 | 0.813 | 0.879 |
5SPSDP | 0.25 | 8 | 82.5 | 77.5 | 78.6 | 80.0 | 0.601 | 0.805 | 0.862 |
CPD | 8 | 0.25 | 81.0 | 76.5 | 77.5 | 78.8 | 0.576 | 0.792 | 0.850 |
5SNPF | 0.25 | 4 | 73.5 | 79.5 | 78.2 | 76.5 | 0.531 | 0.758 | 0.802 |
PseDNC | 1 | 4096 | 74.0 | 73.0 | 73.3 | 73.5 | 0.470 | 0.736 | 0.790 |
4NF | 0.125 | 0.5 | 55.5 | 88.5 | 82.8 | 72.0 | 0.466 | 0.665 | 0.783 |
PSNP + 4NF | 1 | 16 | 83.5 | 80.0 | 80.7 | 81.8 | 0.635 | 0.821 | 0.893 |
PSNP + 5SNPF | 1 | 32 | 81.0 | 80.5 | 80.6 | 80.8 | 0.615 | 0.808 | 0.882 |
PSNP + 5SPSDP | 2 | 32 | 82.5 | 81.0 | 81.3 | 81.8 | 0.635 | 0.819 | 0.885 |
PSNP + PseDNC | 0.5 | 0.25 | 87.5 | 70.5 | 74.8 | 79.0 | 0.589 | 0.806 | 0.854 |
PSNP + CPD | 8 | 0.25 | 82.0 | 75.5 | 77.0 | 78.8 | 0.576 | 0.794 | 0.850 |
PSNP + 4NF + 5SNPF | 1 | 16 | 85.5 | 79.5 | 80.7 | 82.5 | 0.651 | 0.830 | 0.897 |
PSNP + 4NF + 5SPSDP | 1 | 8 | 82.5 | 82.5 | 82.5 | 82.5 | 0.650 | 0.825 | 0.895 |
PSNP + 4NF + CPD | 8 | 0.25 | 82.0 | 75.5 | 77.0 | 78.8 | 0.576 | 0.794 | 0.850 |
PSNP + 4NF + PseDNC | 1 | 16 | 80.5 | 78.5 | 78.9 | 79.5 | 0.590 | 0.797 | 0.873 |
PSNP + 4NF + 5SNPF + 5SPSDP | 1 | 8 | 81.5 | 80.5 | 80.7 | 81.0 | 0.620 | 0.811 | 0.896 |
PSNP + 4NF + 5SNPF + CPD | 64 | 16 | 84.0 | 73.0 | 75.7 | 78.5 | 0.573 | 0.796 | 0.854 |
PSNP + 4NF + 5SNPF + PseDNC | 1 | 16 | 85.5 | 80.0 | 81.0 | 82.8 | 0.656 | 0.832 | 0.899 |
PSNP + 4NF + 5SNPF + PseDNC + CPD | 64 | 16 | 84.0 | 73.0 | 75.7 | 78.5 | 0.573 | 0.796 | 0.854 |
PSNP + 4NF + 5SNPF + PseDNC + 5SPSDP | 1 | 8 | 81.5 | 81.5 | 81.5 | 81.5 | 0.630 | 0.815 | 0.897 |