m5CPred-SVM: a novel method for predicting m5C sites of RNA

BMC Bioinformatics

Table 4 The results of feature selection for A. thaliana

Feature subset	KS	BC	Sn (%)	Sp (%)	Pre (%)	Acc (%)	Mcc	F1score	AUC
PseDNC	0.125	0.25	59.4	80.6	75.4	70.0	0.410	0.665	0.760
4NF	0.125	1	62.3	76.3	72.4	69.3	0.389	0.670	0.759
CPD	16	16	61.1	78.4	73.9	69.8	0.401	0.669	0.753
1SNPF	0.25	0.125	57.7	81.0	75.2	69.4	0.398	0.653	0.753
PSNP	0.5	32	55.8	78.1	71.8	66.9	0.347	0.628	0.724
3SPSDP	0.0625	1	58.2	72.4	67.8	65.3	0.309	0.626	0.694
PseDNC + 1SNPF	0.25	0.25	61.5	78.8	74.4	70.1	0.409	0.673	0.759
PseDNC + PSNP	1	64	60.0	80.6	75.7	70.5	0.419	0.672	0.769
PseDNC + 3SPSDP	0.25	2	63.4	78.7	74.9	71.1	0.426	0.686	0.773
PseDNC + 4NF	0.25	1	61.0	79.7	75.0	70.3	0.414	0.673	0.763
PseDNC + CPD	16	16	61.0	78.7	74.1	69.7	0.404	0.669	0.753
PseDNC + 3SPSDP + 4NF	0.25	1	65.1	77.3	74.2	71.2	0.427	0.693	0.777
PseDNC + 3SPSDP + 1SNPF	0.25	0.5	65.2	77.3	74.1	71.2	0.428	0.694	0.776
PseDNC + 3SPSDP + PSNP	0.25	1	64.1	76.8	73.4	70.4	0.412	0.684	0.768
PseDNC + 3SPSDP + CPD	16	16	61.0	78.8	74.2	69.9	0.404	0.670	0.753
PseDNC + 3SPSDP + 4NF + 1SNPF	0.5	2	64.9	78.1	74.7	71.5	0.433	0.695	0.779
PseDNC + 3SPSDP + 4NF + PSNP	0.5	2	63.5	78.5	74.7	71.0	0.424	0.686	0.772
PseDNC + 3SPSDP + 4NF + CPD	16	16	61.0	78.8	74.2	69.9	0.404	0.670	0.755
PseDNC + 3SPSDP + 4NF + 1SNPF + PSNP	0.25	0.5	68.1	75.5	73.5	71.8	0.437	0.707	0.782
PseDNC + 3SPSDP + 4NF + 1SNPF + CPD	16	16	61.1	78.9	74.3	70.0	0.406	0.670	0.756
PseDNC + 3SPSDP + 4NF + 1SNPF + PSNP + CPD	16	16	61.1	78.9	74.3	70.0	0.406	0.670	0.756

ISSN: 1471-2105