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Table 3 Top five candidate lncRNAs highly prioritized to be associated with ASD.

From: Prediction and prioritization of autism-associated long non-coding RNAs using gene expression and sequence features

Gene ID Gene symbol Annotation Co-expressed protein-coding genes in the BrainSpan dataset
(PCC>0.95)*
Traits reported in GWAS Catalog**
ENSG00000229807 XIST X inactive specific transcript \ \
ENSG00000240801 AC132217.1 3' overlapping ncRNA IGF2 IGF2 Birth weight
ENSG00000228971 LINC02607 Long intergenic non-protein coding RNA 2607 \ Intelligence, cognitive performance
ENSG00000258283 AC011603.4 Antisense to DDN DDN Intelligence, cognitive ability, Bipolar disorder
ENSG00000221857 AC020907.2 Novel transcript GNPTG, NDRG2, TNFSF12, TNFSF12-TNFSF13 \
  1. *The protein-coding genes co-expressed with the candidate lncRNAs in the BrainSpan dataset are indicated. Pearson Correlation Coefficient (PCC) > 0.95 was used to select the co-expressed gene pairs.
  2. **Traits reported to be associated with the genomic loci from which the candidate lncRNAs are transcribed. Information was retrieved from GWAS Catalog (https://www.ebi.ac.uk/gwas/).