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Table 1 Average AUC values of SEPT and SEP by training model on one cell line data and test on another cell line data in running 10 times

From: Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network

Model

Test

train

GM12878

HMEC

HUVEC

HeLa-S3

IMR90

K562

NHEK

SEPT

GM12878

*

0.63

0.68

0.66

0.67

0.62

0.62

 

HMEC

0.59

*

0.57

0.61

0.67

0.56

0.59

 

HUVEC

0.62

0.62

*

0.66

0.63

0.58

0.64

 

HeLa-S3

0.61

0.62

0.69

*

0.66

0.63

0.66

 

IMR90

0.58

0.65

0.62

0.59

*

0.56

0.62

 

K562

0.64

0.61

0.66

0.66

0.62

*

0.64

 

NHEK

0.62

0.63

0.66

0.67

0.66

0.59

*

SEP

GM12878

*

0.57

0.62

0.59

0.57

0.55

0.55

 

HMEC

0.51

*

0.53

0.54

0.60

0.50

0.55

 

HUVEC

0.59

0.55

*

0.58

0.57

0.56

0.55

 

HeLa-S3

0.56

0.56

0.60

*

0.58

0.54

0.58

 

IMR90

0.53

0.61

0.56

0.55

*

0.51

0.57

 

K562

0.56

0.53

0.54

0.53

0.53

*

0.53

 

NHEK

0.53

0.57

0.56

0.55

0.56

0.50

*