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Table 1 Average AUC values of SEPT and SEP by training model on one cell line data and test on another cell line data in running 10 times

From: Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network

Model Test
train
GM12878 HMEC HUVEC HeLa-S3 IMR90 K562 NHEK
SEPT GM12878 * 0.63 0.68 0.66 0.67 0.62 0.62
  HMEC 0.59 * 0.57 0.61 0.67 0.56 0.59
  HUVEC 0.62 0.62 * 0.66 0.63 0.58 0.64
  HeLa-S3 0.61 0.62 0.69 * 0.66 0.63 0.66
  IMR90 0.58 0.65 0.62 0.59 * 0.56 0.62
  K562 0.64 0.61 0.66 0.66 0.62 * 0.64
  NHEK 0.62 0.63 0.66 0.67 0.66 0.59 *
SEP GM12878 * 0.57 0.62 0.59 0.57 0.55 0.55
  HMEC 0.51 * 0.53 0.54 0.60 0.50 0.55
  HUVEC 0.59 0.55 * 0.58 0.57 0.56 0.55
  HeLa-S3 0.56 0.56 0.60 * 0.58 0.54 0.58
  IMR90 0.53 0.61 0.56 0.55 * 0.51 0.57
  K562 0.56 0.53 0.54 0.53 0.53 * 0.53
  NHEK 0.53 0.57 0.56 0.55 0.56 0.50 *