Table 1 Statistics of CNV number and overall length of all 50 CNV sets
From: Performance of copy number variants detection based on whole-genome sequencing by DNBSEQ platforms
Dataset | Number | Overall length (Mb) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
BreakDancer | CNVnator | Pindel | DELLY | LUMPY | BreakDancer | CNVnator | Pindel | DELLY | LUMPY | |
BGISEQ-500_PE100 | 2329 | 5778 | 4924 | 1904 | 2378 | 6.62 | 27.07 | 12.03 | 23.38 | 18.10 |
BGISEQ-500_PE150-1 | 1646 | 3617 | 4463 | 1624 | 1422 | 7.42 | 30.10 | 9.21 | 22.43 | 17.64 |
BGISEQ-500_PE150-2 | 2265 | 4241 | 4310 | 2209 | 2202 | 7.68 | 32.37 | 8.24 | 28.01 | 22.37 |
DNBSEQ-G400_PE100 | 2160 | 4354 | 4688 | 1745 | 1889 | 7.41 | 26.74 | 9.03 | 23.13 | 18.25 |
DNBSEQ-G400_PE150_PCR-1 | 1576 | 2234 | 4577 | 1902 | 1609 | 9.11 | 22.79 | 11.81 | 23.61 | 17.62 |
DNBSEQ-G400_PE150_PCR-2 | 1600 | 2209 | 4689 | 1900 | 1533 | 7.59 | 22.68 | 11.21 | 23.93 | 20.15 |
DNBSEQ-G400_PE150_PCRfree-1 | 1519 | 2890 | 4221 | 1705 | 1463 | 8.53 | 25.78 | 12.07 | 25.51 | 18.58 |
DNBSEQ-G400_PE150_PCRfree-2 | 1523 | 2860 | 4172 | 1713 | 1505 | 8.20 | 25.43 | 9.84 | 22.30 | 18.42 |
HiSeq2500_PE150 | 968 | 2660 | 4045 | 1709 | 1380 | 7.03 | 26.49 | 10.68 | 29.73 | 22.25 |
NovaSeq6000_PE150 | 897 | 1229 | 5730 | 1773 | 1350 | 6.32 | 22.54 | 9.64 | 28.52 | 22.02 |