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Table 1 Statistics of CNV number and overall length of all 50 CNV sets

From: Performance of copy number variants detection based on whole-genome sequencing by DNBSEQ platforms

Dataset Number Overall length (Mb)
BreakDancer CNVnator Pindel DELLY LUMPY BreakDancer CNVnator Pindel DELLY LUMPY
BGISEQ-500_PE100 2329 5778 4924 1904 2378 6.62 27.07 12.03 23.38 18.10
BGISEQ-500_PE150-1 1646 3617 4463 1624 1422 7.42 30.10 9.21 22.43 17.64
BGISEQ-500_PE150-2 2265 4241 4310 2209 2202 7.68 32.37 8.24 28.01 22.37
DNBSEQ-G400_PE100 2160 4354 4688 1745 1889 7.41 26.74 9.03 23.13 18.25
DNBSEQ-G400_PE150_PCR-1 1576 2234 4577 1902 1609 9.11 22.79 11.81 23.61 17.62
DNBSEQ-G400_PE150_PCR-2 1600 2209 4689 1900 1533 7.59 22.68 11.21 23.93 20.15
DNBSEQ-G400_PE150_PCRfree-1 1519 2890 4221 1705 1463 8.53 25.78 12.07 25.51 18.58
DNBSEQ-G400_PE150_PCRfree-2 1523 2860 4172 1713 1505 8.20 25.43 9.84 22.30 18.42
HiSeq2500_PE150 968 2660 4045 1709 1380 7.03 26.49 10.68 29.73 22.25
NovaSeq6000_PE150 897 1229 5730 1773 1350 6.32 22.54 9.64 28.52 22.02