From: A sequence-based multiple kernel model for identifying DNA-binding proteins
Kernel type | Model | ACC (%) | SN (%) | Spec (%) | MCC | AUC |
---|---|---|---|---|---|---|
\({\mathbf {K}}_{GE}\) | SVM | 71.6 | 70.1 | 73.1 | 0.432 | 0.785 |
\({\mathbf {K}}_{MCD}\) | SVM | 70.9 | 68.2 | 73.5 | 0.417 | 0.761 |
\({\mathbf {K}}_{NMBAC}\) | SVM | 71.1 | 73.3 | 69.1 | 0.424 | 0.771 |
\({\mathbf {K}}_{PSSM-AB}\) | SVM | 76.9 | 84.4 | 69.8 | 0.547 | 0.839 |
\({\mathbf {K}}_{PSSM-DWT}\) | SVM | 76.0 | 79.2 | 72.9 | 0.522 | 0.837 |
\({\mathbf {K}}_{PsePSSM}\) | SVM | 78.5 | 82.5 | 74.7 | 0.573 | 0.857 |
Mean weighted kernels | SVM | 83.1 | 84.6 | 81.8 | 0.664 | 0.913 |
MKL-CKA | SVM | 84.2 | 85.9 | 82.6 | 0.684 | 0.914 |