Table 4 List of retrieved peptides for SARS-CoV-2 main protease case study
From: Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm
PDB id | Description | Protein chain | Peptide chain | Peptide AA sequence |
|---|---|---|---|---|
2q6g | SARS-CoV main protease H41A mutant | A | C | -TSAVLQSGFRK |
1uk4 | SARS-CoV main proteinase | B | H | —NSTLQ——- |
1lvm | Thermotoga maritima methyltransferase | B | D | -ENLYFQ——- |
1lvm | Thermotoga maritima methyltransferase | A | C | -ENLYFQ——- |
3mmg | Tobacco vein mottling virus protease | A | C | -ETVRFQS—— |
1lvb | Tobacco etch virus protease | B | D | TENLYFQSGT— |
1lvb | Tobacco etch virus protease | A | C | TENLYFQSGT— |
5om5 | Human alpha1-antichymotrypsin | A | B | -TSAVLQSGFR– |
6hgj | SARS-CoV main protease variant NewBG-III | A | B | a |
3caa | Cleaved antichymotrypsin A347R | A | B | a |