Table 5 RMSDs for SARS-CoV-2 main protease and superposition of receptors identified by propedia
From: Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm
PDB id | Chain | Propedia Alig. score | Propedia site RMSD | Rosetta receptors RMSD | Rosetta score | P1-CYS145 distance |
|---|---|---|---|---|---|---|
2q6g | A | 10.36 | 0.34 | 0.997 | \(-\) 542.507 | 3.6 |
1uk4 | B | 9.47 | 0.44 | 0.659 | \(-\) 525.999 | 3.6 |
1lvm | B | 5.69 | 0.84 | 2.175 | \(-\) 525.907 | 4.0 |
1lvm | A | 5.26 | 1.53 | 2.085 | \(-\) 528.398 | 5.5 |
3mmg | A | 4.67 | 0.47 | 1.785 | \(-\) 530.833 | 3.7 |
1lvb | B | 4.54 | 1.21 | 2.521 | \(-\) 530.517 | 3.6 |
5om5 | A | 3.18 | 1.63 | 6.665 | \(-\) 538.985 | 3.7 |
6hgj | A | 3.38 | 2.20 | 11.156 | – | – |
3caa | A | 3.25 | 2.16 | 9.943 | – | – |