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Table 7 List of retrieved peptides for the AG protease case study using binding site query

From: Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm

PDB id

Description

Protein chain

Peptide chain

3qgj

Lysobacter enzymogenes protease

D

C

1p11

Lysobacter enzymogenes protease

I

E

2obq

Hepacivirus NS3-4A protease

B

C

2oin

Hepacivirus NS3-4A protease R155K

C

A

2o8m

Hepacivirus NS3-4A protease S139A

D

B

3kn2

Hepacivirus NS3-4A protease

B

C

3kf2

Hepacivirus NS3-4A protease

C

A

3sga

Streptomyces griseus protease

P

E

6rw2

Human Ephrin type-A receptor 2

B

A

4a1t

Hepacivirus NS3-4A protease

D

B