Table 4 Comparison of the refined donkey genome with SOAPdenovo-assembled genome
From: LDscaff: LD-based scaffolding of de novo genome assemblies
Cutoff | Scaffolds before | Scaffolds after | N50 before | N50 after |
|---|---|---|---|---|
0.1 | 80 | 81 | 23779253 | 2108947689 |
0.15 | 80 | 254 | 23779253 | 44040746 |
0.2 | 80 | 382 | 23779253 | 32092974 |
0.3 | 80 | 484 | 23779253 | 26289196 |
0.4 | 80 | 514 | 23779253 | 24644580 |
0.5 | 80 | 542 | 23779253 | 23779253 |