Fig. 2
From: recoup: flexible and versatile signal visualization from next generation sequencing
Examples of the different NGS signal plot types provided by recoup applied on the CEBPα dataset from [9]: a Average coverage profile of genome-wide CEBPα binding around (1 kb upstream and 1 kb downstream) the Transcriptional Start Sites (TSSs) of all mouse genes as well as the signal of Input DNA used as control, b Signal heatmaps depicting the coverage profile of genome-wide CEBPα binding around the TSSs for each gene, ordered from top to bottom according to signal strength, c Averaged coverage profiles across 2 kb around the TSS for each gene ordered in ascending order using stage e15.5 as a reference depicting correlation in terms of binding patterns and binding strength across the five time points and the Input, d The number of putative binding sites for each mouse liver developmental stage as described in [9]