DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms

BMC Bioinformatics

Table 1 Comparison of prediction performance on lncRNA-protein interactions on the NPInter v3.0 human dataset

Broad category	Methods	AUC	AUPRC
Machine-learning based methods	RPISeq (RF)	0.708	0.486
	RPISeq (SVM)	0.701	0.473
	lncPro	0.723	0.588
	rpiCOOL	0.721	0.503
	IPMiner	0.714	0.569
	lncADeep	0.825	0.646
	RPITER	0.827	0.664
	LPI-BLS	0.782	0.575
	DeepLPI	0.866	0.703
Network based methods	LPIHN	0.776	0.421
	LPBNI	0.786	0.559
	PLPIHS	0.672	0.483
	LPLNP	0.801	0.566
	PLIPCOM	0.821	0.609
	SFPEL-LPI	0.823	0.599

ISSN: 1471-2105