Table 2 The summary of real and simulated datasets used in the experiment along with the corresponding reference genome links
From: S-conLSH: alignment-free gapped mapping of noisy long reads
Dataset | Type | Platform | # of reads | Reference genome |
|---|---|---|---|---|
H. sapiens-real | Real | PacBio RS II P5/C3 release | 290,992 | hg38 |
E. coli-real | Real | PacBio RS II P5/C3 release | 300 | Escherichia coli str. K-12 substr. MG1655 |
A. thaliana-real | Real | PacBio RS II P5/C3 release | 3,448,228 | TAIR10 |
O. sativa-real | Real | PacBio RS II P5/C3 release | 590,268 | Build 4.0 |
S. cerevisiae-real | Real | PacBio RS II P5/C3 release | 594,243 | S288C (assembly R64) |
H. sapiens-sim | Simulated | PBSIM | 146,932 | hg38 |