Table 6 Performance of conLSH with change of K, L, z, and \(\lambda\) for real human SMRT dataset
From: S-conLSH: alignment-free gapped mapping of noisy long reads
Concatenation | Context size | L | z | Indexing | Mapping | % of reads |
|---|---|---|---|---|---|---|
Factor (K) | \(2\times \lambda +1\) | Time (s) | Time (s) | Mapped | ||
2 | 7 | 1 | 5 | 790 | 80 | 97.7 |
2 | 7 | 2 | 5 | 794 | 99 | 99.9 |
2 | 7 | 3 | 5 | 797 | 122 | 99.9 |
2 | 7 | 1 | 7 | 791 | 82 | 97.7 |
2 | 7 | 1 | 11 | 794 | 80 | 97.7 |
2 | 5 | 1 | 5 | 67 | 11 | 73.4 |
4 | 3 | 1 | 5 | 302 | 107 | 97.2 |
3 | 5 | 1 | 5 | 849 | 85 | 96.8 |