Table 7 Performance of conLSH with change of z for chromosome 1 of H. sapiens-sim dataset consisting of 32,290 reads
From: S-conLSH: alignment-free gapped mapping of noisy long reads
Concatenation | Context size | L | z | Indexing | Mapping | # of correct |
|---|---|---|---|---|---|---|
Factor (K) | \(2\times \lambda +1\) | Time (s) | Time (s) | Mapping | ||
2 | 7 | 2 | 3 | 51 | 37 | 31,960 |
2 | 7 | 2 | 5 | 51 | 38 | 31,964 |
2 | 7 | 2 | 11 | 48 | 122 | 31,963 |
2 | 7 | 2 | 20 | 48 | 122 | 31,950 |