Table 2 Average percentage of all peaks overlapping
From: WACS: improving ChIP-seq peak calling by optimally weighting controls
WACS | WACS Random10 | Matched MACS2 | All MACS2 | AIControl | |
|---|---|---|---|---|---|
WACS | – | 37.3 | 29.0 | 27.1 | 29.0 |
WACS Random10 | 38.6 | – | 32.7 | 34.9 | 32.7 |
Matched MACS2 | 31.9 | 35.0 | – | 37.9 | 31.0 |
All MACS2 | 30.2 | 37.3 | 37.8 | – | 33.6 |
AIControl | 6.5 | 6.3 | 5.0 | 5.5 | – |