Table 4 Number of datasets out of 90 where each algorithm’s peaks show the highest motif enrichment, compared to the other algorithms
From: WACS: improving ChIP-seq peak calling by optimally weighting controls
Type | WACS | WACS Random10 | Matched MACS2 | All MACS2 | AIControl |
|---|---|---|---|---|---|
All peaks | 75 | 5 | 7 | 3 | 0 |
Standardized | 61 | 8 | 10 | 4 | 7 |