Table 5 Number of experiments out of 45 for which each peak calling approach has the highest reproducibility between biological replicates
From: WACS: improving ChIP-seq peak calling by optimally weighting controls
Type | WACS | WACS Random10 | Matched MACS2 | All MACS2 | AIControl |
|---|---|---|---|---|---|
All peaks | 26 | 7 | 8 | 1 | 3 |
Standardized | 28 | 7 | 5 | 4 | 1 |