Table 3 Number of serine protease structures that remained after the modelling of NNAAs and the missing flanking amino acids
From: An automated protocol for modelling peptide substrates to proteases
PDB | MEROPS | Template | Model | Substrate id* | Set |
|---|---|---|---|---|---|
1iau | S01.010 | IEPD— | IEPDTDAP | P50502 | Entropy |
1ppg | S01.131 | AAPA— | AAPAAAPP | P16403 | Entropy |
1tps | S01.151 | -LTREL– | FLTRELAE | P23396 | Entropy |
4dt7 | S01.217 | VDPRL— | VDPRLIDG | P04070 | Entropy |
1ycp | S01.217 | -GVRGP– | GGVRGPRV | P02671 | Validation |
2age | S01.151 | AAPR— | AAPRERTT | Q13895 | Validation |
1ekb | S01.156 | -DDK— | DDDKIVGG | P35030 | Test |
2zck | S01.162 | -SQY— | SSQYSNTE | P04279 | Test |
3tjv | S01.147 | PTSYAGDD | PTSYAGDD | Q1D7F8 | Test |